Water filtration with Zymo Bashing Bead tubes and DNA/RNA Shield reagent for subsequent DNA and RNA extraction from microbial communities
Christopher A Hempel
Filtration
Zymo Bashing Bead tubes
DNA/RNA Shield reagent
DNA extraction
RNA extraction
Microbial community
Abstract
Filtration of water samples with Zymo Bashing Bead tubes and DNA/RNA Shield reagent for subsequent DNA and RNA extraction from microbial communities.
Before start
Label bashing tubes (1 per sample + 1 filtration control) and load them with 1 mL of DNA/RNA Shield
Steps
Procedure
Sterilize forceps and scissors with burner, then bleach, then EtOH before each filtration
Filter water sample, make sure to keep the filtration unit closed when opening the wrapping, to hold nothing but the sample over the unit, and to stand as far as possible away from the unit while it is open
Cut filter into small pieces (forceps and scissors) while filter lays on the filtration unit, make sure to stand as far as possible away from the unit
Transfer pieces into bashing tubes until all pieces are covered with DNA/RNA Shield
Clean filtration unit adapter with bleach after each filtration
Bashing tubes can be stored at -20°C