Soil sample DNA extraction (SuperSoil)
Yin-Tse Huang, Hsin-Mao Wu, Jie Hao Ou, Yu-Hsuan Fan
Abstract
A method for fungal and bacterial DNA extraction.
Steps
Sample preparation & Cell lysis
Add 0.2mL
⌀=1.0 mm zirconia beads, 0.2mL
⌀=0.5 mm zirconia beads, 800µL
SD1 solution, 0.5g
Sample
into a 1.5 ml microcentrifuge tube. Vortex briefly to mix.
Homogenize samples using Vortex-Genie® 2 with SI-H524 Horizontal microtube holder. Vortex at maximum speed for 0h 4m 0s
Centrifuge the 1.5 ml microcentrifuge tube at14000rpm,25°C
Inhibitor precipitation
Add 200µL
SD2 solution to a clean 1.5 ml microcentrifuge tube.
Transfer 500µL
supernatant to the tube in the previous step. Vortex 0h 0m 5s
for mixing.
Centrifuge at14000rpm,25°C
DNA binding
Add 600µL
SD3 solution to a clean 1.5 ml microcentrifuge tube. Avoiding the pellet, transfer up to 700µL
of supernatant from the previous step to that tube. Vortex 0h 0m 5s
for mixing.
Take 650µL
to spin column (with collection tube) and centrifuge at14000rpm,25°C
Discard the flow-through and repeat step 8 to ensure all the lysates have passed through the spin column.
Carefully place the spin column into a clean 2 ml collection tube. Avoid splashing any flow-through onto the spin column.
Wash
Add 500µL
of Solution SEA to the spin column. Centrifuge at 14000rpm,25°C
Discard the flow-through and return the spin column to the same 2 ml collection tube.
Add 500µL
80% ethanol to the spin column. Centrifuge at 14000rpm,25°C
Discard the flow-through and place the spin column into a new 2 ml collection tube.
Centrifuge at 14000rpm,25°C
Carefully place the spin column into the new 1.5 ml microcentrifuge tube
Elute
Add 50µL
RNase-free water (DEPC-treated water) to the center of the white filter membrane.
Centrifuge at 14000rpm,25°C
Discard the spin column. The DNA will be in the microcentrifuge tube.
Quality and quantity assessment
Use BioTek Take3 & Take3 Trio Microvolume Plates to measure the quality and quantity of your specimens. And then upload them to Google Drive (1 MolecularWork (Direct edit) 分生實驗號碼 (直接編輯) w_ Primer list)