Liposome tubulation

Pietro De Camilli, Xinbo Wang

Published: 2023-08-26 DOI: 10.17504/protocols.io.e6nvwkx2dvmk/v1

Abstract

This protocol details methods for the LRRK2-induced liposome tubulation experiment and its analysis by confocal fluorescence microscopy and negative stained electron microscopy.

Attachments

Steps

Confocal fluorescence microscopy analysis

1.

Prepare the samples in a PCR tube with 300nanomolar (nM) LRKK2 proteins (WT or mutant full length LRRK2 or RCKW), 20micromolar (µM) liposomes with or without 1millimolar (mM) GMPPNP (or other guanylnucleotides).

Note
Note: Liposome tubulation is sensitive to LRRK2 concentration. Too much protein results in more liposome aggregates.

2.

Immediately deposit 6µL -10µL samples of step 1 on a 35 mm glass bottom dish and incubate at 37°C for 0h 30m 0s.

Note
Note: Drop some buffer in the dish to prevent samples from drying out due to evaporation during incubation.

3.

After incubation, capture images with a Spinning disk confocal (SDC) microscopy at Room temperature on a Nikon Ti-E inverted microscope using the Improvision UltraVIEW VoX system (Perkin-Elmer).

Note
Note: Movies were collected from time 0h 0m 0s.

Negative stained electron microscopy (EM) analysis

4.

Glow-discharge carbon-coated grids (25 mA, 0h 0m 45s).

5.

Place the discharged grids into a 35 mm glass bottom dish.

6.

Prepare samples in a PCR tube with 300nanomolar (nM) LRKK2, 80micromolar (µM) liposomes and 1millimolar (mM) GMPPNP.

7.

Immediately apply 6µL of the mixture to the grid and incubate the mixture at 37°C for 0h 30m 0s.

Note
Note: Drop some buffer in the dish to prevent samples from drying out due to evaporation during incubation.

8.

Blot the grid with filter paper after incubation and stain samples with 2% uranyl acetate for 0h 0m 40s.

9.

Dry the grid with filter paper.

10.

Take images using a Talos L 120C TEM microscope at 80 kV with Velox software and a 4k × 4K Ceta CMOS Camera (Thermo Fisher Scientific).

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