GFP-sacB Characterization
NUS iGEM
Abstract
2023 NUS-Singapore iGEM team followed this protocol to characterise their New Composite Part "GFP-sacB" with IPTG and sucrose solution at various concentrations.
Steps
Cell Inoculation and Incubation (Day Before Characterization)
Inoculate cells with GFP-sacB gene from the cell stock.
Add 5mL
of LB media and 5µL
of the appropriate antibiotic to a Falcon tube.
Incubate the Falcon tube at 37°C
in an incubator.
Sample Preparation (96-well Plate)
Decide the concentrations of IPTG and sucrose solutions for characterization.
Prepare new Falcon tube(s).
Add 5mL
of M9 media, 5µL
of the appropriate antibiotic, and 100µL
of cells cultured the previous day.
Add the required volume of IPTG to reach the desired concentration.
Incubate the cells for 2h 0m 0s
at 37°C
.
Prepare a sterile 96-well plate.
Adjust sucrose concentration by adding DI water and sucrose solution to each well (final volume of 20µL
) according to the plate map.
Add 200µL
of cultured cells to each well already containing DI water and sucrose solution (final well volume of 220µL
).
Add at least 3 wells of 220µL
of M9 media as the blank (negative control).
Characterization and Plate Reader Reading
Place the 96-well plate into the plate reader.
Create a protocol in the plate reader's software according to the following setting:
A | B |
---|---|
Plate Type | 96 WELL PLATE |
Set Temperature | Setpoint 37°C |
Preheat before moving to next step | |
Start Kinetic | Runtime 6:10:00 (HH:MM:SS), Interval 0:30:00, 13 Reads |
Shake | Orbital: Continuous |
Frequency: 282 cpm (3 mm) | |
Read 1 | Absorbance Endpoint |
Full Plate | |
Wavelengths: 600 | |
Read Speed: Normal, Delay: 100 msec, Measurements/Data Point: 8 | |
Read 2 | Fluorescence Endpoint |
Full Plate | |
Excitation: 485, Emission: 528 | |
Optics: Top, Gain: 100 | |
Light Source: Xenon Flash, Lamp Energy: High | |
Read Speed: Normal, Delay: 100 msec, Measurements/Data Point: 10 | |
Read Height: 7 mm | |
End Kinetic |
Start the continuous reading.
After the reading is complete, remove the 96-well plate from the plate reader.
Save the data as a CSV file for future analysis.
Discard the used 96-well plate in a biohazard bin.