Streamlining spatial omics data analysis with Pysodb

Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan

Published: 2023-12-22 DOI: 10.1038/s41596-023-00925-5

Spatial omics data

Pysodb

Data visualization

Data storage

Python tools

AI 解读

Supplementary information

Supplementary Information

Supplementary Figs. 1–4, Supplementary Table 2 and Supplementary Protocols.

Reporting Summary

Supplementary Table 1

Summary of parameters.

Genetic manipulation and immortalized culture of ex vivo primary human germinal center B cells

The cell-line-derived subcutaneous tumor model in preclinical cancer research

Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous pre- and postsynaptic recording at cortical synapses

NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport

Genome-wide pooled CRISPR screening in neurospheres

High-throughput cultivation and identification of bacteria from the plant root microbiota

Viral crosslinking and solid-phase purification enables discovery of ribonucleoprotein complexes on incoming RNA virus genomes

Mitochondrial single-cell ATAC-seq for high-throughput multi-omic detection of mitochondrial genotypes and chromatin accessibility

Addendum: Micro-CT acquisition and image processing to track and characterize pulmonary nodules in mice

Multiplexed single-cell proteomics using SCoPE2

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References

Supplementary information

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Streamlining spatial omics data analysis with Pysodb

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