Minimum Inhibitory Concentration (MIC) and Minimum Bactericidal Concentration (MBC) Assays Using Broth Microdilution Method

Tomasz Swebocki, Alexandre Barras, Aleksandra Maria Kocot, magdalena.plotka, rabah.boukherroub

Published: 2023-06-23 DOI: 10.17504/protocols.io.5qpvo3x6dv4o/v1

Disclaimer

The protocol provided herein is intended for informational purposes only. The authors of this protocol have made reasonable efforts to ensure the accuracy and reliability of the information presented. However, the authors do not assume any responsibility for any accidents, injuries, or damages that may occur as a result of following the protocol.

Experimentation and scientific procedures involve inherent risks, and it is essential to exercise caution, adhere to safety guidelines, and consult with qualified professionals when necessary. The authors cannot be held liable for any direct, indirect, incidental, consequential, or special damages arising out of the use of this protocol.

By utilizing this protocol, you acknowledge and accept the risks associated with experimentation and agree that the authors shall not be held responsible for any unfavorable outcomes. It is your responsibility to assess the suitability of the protocol for your specific needs and take appropriate safety measures to ensure the well-being of yourself and others involved.

Remember, safety should always be the highest priority when conducting any experiments or scientific endeavors.

Abstract

The presented protocol outlines a comprehensive assessment of the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) values for bacterial cell cultures. These experiments are vital for screening bacterial susceptibility to antibiotics and substances with potential antibacterial properties. The protocol not only covers the necessary preparatory steps but also introduces the application of the widely recognized Gompertz model. The protocol ensures a smooth execution of the assessment through thorough preparation and step-by-step instructions. The user-friendly instructions provided enable researchers to easily follow the protocol, facilitating the implementation of the assessment. By adhering to the outlined procedures, researchers can acquire a deeper understanding of bacterial susceptibility, evaluate the efficacy of antimicrobial agents through MIC and MBC values, and contribute to the advancement of antibacterial strategies.

Before start

Be sure to read the protocol fully, before starting any manipulation. Be sure that all the equipment needed is working properly and you have enough time to do all the manipulations. If it is your first time doing this, be sure to plan more time, as usually first times take longer. Be sure that both you and environment is well protected and your laboratory regulations allow for manipulation with bacteria.

For a single test, that consist of a triplicate you will need around 4 mL of MHB, however, it is recommended to have much more prepared (preferably around 20 mL) in case any mishaps occur. You have to have an inoculated medium on a Petri dish with discrete colonies already prepared.

Steps

Pre-preparation of stock colony

1.

Take the inoculated Petri dish and transfer one colony to a tube with approx.3mL of fresh MHB .

2.

Incubate the tube for around 3h 0m 0s (or more, depending on the strain and the size and age of the colony used) at 37°C.

Note
Stock colony can be prepared in the morning and be worked with in the early afternoon. It can also grow overnight (to the late stationary phase) and be diluted (at least by 1:50 or 1:100) with the fresh MHB . In case of the second scenario, it will take 2-3 h to reach the optimum OD600 (around 0.1). If you have any concerns refer to CLSI M100 guidelines.

Preparation of diluted standardized inoculum

3.

Note
This part should be done only when the 96-well microplate is ready to be inoculated.
Prepare standardized inoculum by first measuring the OD600 of your stock colony. If the value of the OD600:

  • Is greater than 0.1, dilute the culture with MHB to reach a value of 0.1,
  • Is between 0.09 and 0.1 you can move to a next step,
  • is below 0.09 put the culture back and incubate it for 15-30 minutes more.
4.

Pour 10mL of MHB into a trough and add 100µL of the standardized inoculum . Mix it by flushing couple of times with a pipette.

Note
10mL of diluted standardized inoculum is enough to inoculate 16 rows.

Preparation of 96-well microplate

5.

Dissolve tested substance ( X ) in MHB at twice the maximum concentration for the test.

Note
E.g., if you want to test the concentration series of X starting from 100µg/mL then you need to prepare the stock solution of tested substance in the concentration of 200µg/mL. Adjust the total volume of dilution to your needs. A 100µL is needed for each row.

6.

Pour around 10mL of MHB to the trough and:

  1. Add 50µL of MHB to each well in columns 1-10 (growth control, GC ( 1 )+ serial dilution ( 2-10 )),
  2. Leave wells in column 11 empty empty (highest concentration of serial dilution),
  3. Add 100µL to the wells in column 12 (sterility control, SC ).
Typical microplate layout for this step.
Typical microplate layout for this step.
7.

Add 100µL of the just prepared solution of X diluted in MHB to the wells in column 11 and remove and pass 50µL to next well until reaching wells in column 2 ,

Note
This will result in the wells in column 2 having 100µL. Remove 50µL of the liquid content from these wells and discard it.

Serial dilution of X on the microplate.
Serial dilution of X on the microplate.
8.

Using multichannel pipette add 50µL of diluted standardized inoculum to each well of columns 1-11 . For more information .

Note
The standardized inoculum is equivalent to 10^8CFU/mL. After 1:100 dilution in MHB the concentration is 10^6CFU/mL. Taking 50µL of the diluted bacterial suspension and adding it to all the wells of columns 1-11 results in a final concentration of approx. 5×10^5CFU/mL. Be sure that the time needed to prepare and dispense the OD600-adjusted bacteria solution do not exceed 0h 15m 0s.

Addition of the diluted standardized inoculum
Addition of the diluted standardized inoculum
9.

Put a protective film on that-prepared well plate. Cover it with a lid. Put a name and/or other details on the side of the plate. Avoid leaving any marks on the lid.

10.

Incubate the plate at 37°C 0h 15m 0s .

Minimal inhibitory concentration (MIC) assessment

11.

After the incubation take the microplate out of the incubator. Remove the lid from the plate and protective film if applied and let it cool down in Room temperature for 0h 15m 0s.

12.

After that time put the microplate into the plate reader and read OD600 values of the wells' content.

13.

Gather the data, and using plotting program such as Prism, OriginPro, Excel or Kaleida plot the data and fit it using modified Gompertz model.

Note
MIC value lies on the intersection of the lower part of the jump with the jump slope (MIC value lies on the intersection of the lower part of the jump with the jump slope (example). A OriginPro model file can be accessed here: ). A OriginPro model file can be accessed here: https://static.yanyin.tech/literature_test/protocol_io_true/protocols.io.5qpvo3x6dv4o/mwd7b6wix7.fdf Alternatively – MIC value can be assessed visually. In that case MIC value is where the no turbidity is observed.
Example of data modelled using Gompertz model (OriginPro).
Example of data modelled using Gompertz model (OriginPro).

Visual assessment of MIC value
Visual assessment of MIC value

Minimal bactericidal concentration (MBC) assessment

14.

Transfer 100µL of the content of the wells were no turbidity was observed to a separate 96-well microplate and dilute it ten fold serially with the solution of NaCl 9g/L

15.

Plate 20µL of the content of the wells directly onto square Petri dish/dishes with MHA and incubate

Possible maximum plating area of square Petri dish (side of. ca 120 mm).
Possible maximum plating area of square Petri dish (side of. ca 120 mm).
16.

Next morning count the colonies on the plates.

Note
You can omit the dilution and counting, and directly plate 20µL of the content of non-turbid wells after MIC assessment. MBC value is, where no growth was observed. You can use this CFU calculator to count the surviving colonies that are between MIC and MBC values: https://static.yanyin.tech/literature_test/protocol_io_true/protocols.io.5qpvo3x6dv4o/mwehb6wix8.xlsm

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