Immunocytochemistry for the characterization of hiPSC to Motor Neuron differentiation

William J Buchser, Mallory Wright, Colin Kremitzki

Published: 2024-01-24 DOI: 10.17504/protocols.io.6qpvr3zbzvmk/v3

Abstract

This immunocytochemistry protocol is used for the characterization of IPSC differentiation into motor neurons using several biomarkers: neuroepithelial cells (SOX1), motor neuron progenitors (OLIG2 and NKX2.2), motor neurons (MNX1), and the mature motor neurons (ISL, ChAT, MAP2).

*Primary and secondary antibody information located in materials section

Before start

To ensure that the observed results are not just random events, use controls, such as undifferentiated IPSCs when doing immunocytochemistry.

Here is an example of how we seed cells onto a 96-well plate. The plate has an equal amount of wells of differentiated (blue) and undifferentiated cells (yellow) for analysis, and we always include a moat (evaporation barrier). The cells are also counted and seeded at equal densities.

A
1
2
3
4
5
6
B
Diff
Diff
IPSC
IPSC
C
Diff
Diff
IPSC
IPSC
D
Diff
Diff
IPSC
IPSC
E

Steps

1.

Remove the medium from your cells

Note
Tip the vessel towards you and pipette from the bottom corner of the well

2.

FIX - Dilute 32% Paraformaldehyde solution to 4% PFA in 1X phosphate-buffered saline (PBS)

3.

Add 100uL of 4% PFA to each well in the 96-well plate. (1ml if using a 6-well plate). Incubate for 0h 15m 0s at room temperature.

4.

Remove the fixative solution and wash with 1XPBS at 100ul per well using a multichannel pipette. Repeat 3 times.

Note
Aspirate and dispense fixative and wash very slowly, so as to not dislodge your cells. Move the plate from side to side between each wash The fixed sample can be stored, covered in foil, for several days at 4°C if needed.

5.

PERMEABILIZE - Add 100uL of 0.5% Triton X-100 to each well of a 96-well (1ml if using 6-well plate)

6.

Incubate for 0h 15m 0s at room temperature.

7.

Remove the permeabilization solution and wash 3 times with 1XPBS

8.

BLOCK - Add 100ul of 3% BSA (bovine serum albumin) or blockAid-blocking solution to each well of a 96-well plate slowly to Block. (1ml if using 6-well plate)

9.

Incubate for at least1h 0m 0s (up to overnight) at room temperature.

10.

Calculate the amount of primary antibody needed (located in materials section) and dilute in 3% BSA + 0.3% Triton X-100 solution

11.

PRIMARY ANTIBODIES - Remove 3% BSA from wells and add 100uL of primary antibody per well

Note
Make sure primary and secondary antibodies are stored properly. Aliquots should be put in the -20 and thawed once, with any remainder kept at 4°C.

12.

Incubate for 1h 0m 0s at room temperature in a dark place or overnight at 4°C.

(Different primary antibody stains may take longer to stain and could require optimization).

13.

Remove primary antibody and wash three times slowly with 1xPBS

Note
Remember to aspirate and dispense fixative and wash very slowly, so as to not dislodge your cells and continue moving plate side to side between washes.

14.

SECONDARY ANTIBODIES - Calculate amount of secondary antibody needed (located in materials section) and dilute in 3% BSA+ .3% TritonX-100 solution and 1:4000 Hoechst.

15.

Add 100uL per well in 96-well and incubate for at least 1h 0m 0s at room temperature in a dark place.

16.

Remove secondary antibody and wash three times with 1xPBS

17.

Scan on the confocal microscope

Note
We currently use the ImageXpress Confocal HT.ai High-Content imaging system and the InCarta image analysis software to asses the presence and intensity of specific protein and to quantify the percent of live nuclei.

Citation
Neuroepithelial cells stained with SOX1/anti-goat (shown as green in photo) and Hoechst (blue)
Neuroepithelial cells stained with SOX1/anti-goat (shown as green in photo) and Hoechst (blue)
Neural progenitors stained with Olig2/anti-rabbit (green) and Hoechst (blue)
Neural progenitors stained with Olig2/anti-rabbit (green) and Hoechst (blue)
 Motor neurons stained with MNX1/anti-mouse (red) and Hoechst (blue)
Motor neurons stained with MNX1/anti-mouse (red) and Hoechst (blue)
Mature motor neurons stained with ISL/anti-mouse (red) and Hoechst (blue)
Mature motor neurons stained with ISL/anti-mouse (red) and Hoechst (blue)
Mature motor neurons stained with Map2/anti-rabbit (green) and Hoechst (blue)
Mature motor neurons stained with Map2/anti-rabbit (green) and Hoechst (blue)

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