Generation of Flp-In™ T-REx™ 293 cells stably expressing VPS13C^mClover under a tetracycline inducible promoter

Pietro De Camilli, Will Hancock-Cerutti, Shujun Cai, Xinbo Wang

Published: 2024-05-31 DOI: 10.17504/protocols.io.36wgqnnnxgk5/v1

Abstract

This method describes the generation of Flp-In™ T-REx™ 293 cells stably expressing internally mClover tagged VPS13C under a tetracycline inducible promoter.

Steps

Cloning

1.

Clone gene of interest into pcDNA5/FRT/TO. For VPS13C^mClover the In-Fusion system (Takara Catalog # 638947) was used.

2.

Sequence plasmid.

Cell culture

3.

Thaw and culture Flp-In™ T-REx™ 293 cells according to Gibco manual (Catalog # R780-07) in a 10cm dish. Once cells are 90% Confluent, split.

4.

Freeze some cells according to Gibco manual protocol for future use.

Transfection and selection of stably integrated cells

5.

Plate cells in 6 well format to ~30% confluence in media containing no antibiotics.

6.

The next day, transfect cells using Fugene HD and a ratio of 9:1 pOG44: pcDNA5/FRT/TO-VPS13C^mClover.

7.

Mix 2µg total DNA (0.2µg pcDNA5/FRT/TO-VPS13C^mClover, 1.8µg pOG44) in 100µL opti-MEM.

8.

Add 8µL Fugene HD to DNA mixture. Let sit 0h 15m 0s.

9.

Add Fugene/DNA mixture to cells in a dropwise fashion.

10.

At 24h post transfection, wash cells and add fresh post-transfection media containing Blasticidin (no Zeocin or Hygromycin).

11.

At 48h post-transfection, split cells and plate at <25% confluence in selection medium containing Blasticidin and 200μg/ml Hygromycin B (no zeocin).

12.

Feed the cells with Hygromycin B selection medium every 3-4 days.

13.

When foci become apparent, pool Foci and allow cells to expand.

Note
In our experience, at 200μg/ml Hygromycin B, it may appear that no colonies remain viable, however after 1-2 weeks a small amount of colonies were observed in which the gene of interest was stably integrated. If all cells are nonviable under these conditions, it may be necessary to reduce the concentration of Hygromycin B in the selection media to 100μg/ml and/or optimize transfection conditions. Per manufacturers protocol, these surviving foci should be isogenic for the inserted gene.

14.

Pooled cells can then be split, frozen, and/or used for experiments.

15.

Freeze cells according to Gibco manual.

Expression of VPS13C

16.

Plate cells at desired confluence in format appropriate for experiment in expression media containing 0.1μg/ml-1μg/ml tetracycline.

Note
In our hands, we observed no difference in expression levels of VPS13C^mClover protein between 0.1 μg/ml and 1 μg/ml and thus we used the lower concentration, however the Gibco manual suggests using 1 μg/ml.

17.

After 24 hours, cells may be lysed for western blot or used for microscopy.

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