Extraction of Non-Structural Carbohydrates (Total Soluble Sugars + Starch) in Plant Tissues

Lynn Doran, Amanda P. De Souza

Published: 2021-12-03 DOI: 10.17504/protocols.io.b2jmqck6

Abstract

Ethanolic extraction of total soluble sugars (liquid fraction) and starch (precipitated fraction) from leaf tissue.

Before start

Freeze-dry and grind leaf tissue into a fine powder.

  • Freeze-dry according to equipment manufacturer's instructions.
  • Freeze-dried leaf tissue can be ground using the tissuelyzer WITHOUT THE USE OF LIQUID NITROGEN.
  • Improperly freeze-dried tissue will experience total sugar degradation and significant starch degradation. Improperly freeze-dried leaf tissue will look oxidized and more brown.

Steps

Ethanolic Extraction

1.

Weigh 10-15 mg of freeze-dried pulverized material into a labeled, 2 mL screw-cap tube. Record the weight.

Note
Ethanol and the hot water bath incubation will dissolve permanent marker and printer ink on some labels. It is advisable to label both the side of the tube and the lid with a unique id

2.

Add 1mL of 80% ethanol to each sample. A repeat pipettor is useful for large sample numbers.

3.

Vortex to mix the samples until all powder dissolved.

4.

Incubate the samples at 80°C in water bath for 0h 20m 0s.

Note
If using snap-cap tubes, put some weight on top of the samples to avoid the caps opening due to pressure build up from ethanol evaporation. A microtube rack is usually sufficient.Screw cap lids are OK without added weight.

5.

Centrifuge the tubes at max speed (>15,000 g) for 0h 3m 0s to precipitate solids.

6.

Decant the supernatant into alabeled 8 mL tube.

Note
Usually the pellet sticks, allowing the supernatant to be poured from one tube to another. If the pellet doesn’t stick, centrifuge again and use a pipette to remove liquid phase.

7.

Repeat steps 2-6 four to six times depending on the tissue/plant. All the supernatants from the same sample should be combined into the correctly labeled 8 mL tube after each centrifugation.

Note
For leaves, four washes is usually enough to remove all the soluble sugars.

8.

Store 8 mL supernatant tubes 80On ice or at 4°C while tissue is incubating at 80°C.

Note
After all supernatants have been combined, ethanolic supernatant can be stored at -20°Cfor several months.

Total Sugar Resuspension

9.

After combining the last ethanolic supernatant, remove the ethanol using a Speed Vac Concencentrator, following manufacturers recommendations.

Note
Thermo-Fisher SPD12 Speed-Vac at 0.1 HPr, 35°C, and Thermo-Fisher RVT404 refrigerated vapor trap -108°C. Ensure Speed-Vac is properly balanced. Ideally samples would be run at 30°Cbut the lowest temperature setting on this instrument was 35°C. Warmer temperatures could degrade sugars and damage sample integrity.

10.

Dry samples on Speed Vac Concentrator just until dry and all traces of ethanol have evaporated.

Note
Using recommended tubes and Thermo-Fisher SPD12 Speed-Vac, it took ~16 hours to remove 4 mLs of ethanol. Recommend loading samples the night before and removing in the afternoon of the following day.

Note
Dried samples can be stored at -20°C for several months.

11.

Add 1mL of distilled or MilliQ water to the dried sugars in the tube.

12.

If using polystyrene 8 mL tubes, transfer the aqueous sugar solution to a polypropylene, polyethylene, or other organic solvent resistant tube.

Note
If polypropylene, polyethylene, or glass 8 mL tubes were used initially, then the following chloroform pigment extraction can be conducted in the current tube (skip to step 13). Organic solvents will melt polystyrene. If a polystyrene 8 mL tube is used, the aqueous sugar solution must be moved to a chemical resistant tube.

12.1.

Vortex the tube for 30 seconds. Use a pasteur pipette to pipette the liquid vigourously ensuring all sugars in the tube have dissolved in the water.

12.2.

Leave the tubes in an ice bath on a plate shaker for 1h 0m 0s to help dissolve all the sugar.

12.3.

Transfer the entire aqueous sugar solution to a new labeled chemical resistant tube such as a 2 mL polypropylene or polyethylene microcentrifuge tube.

13.

Add 500uL of chloroform.

Note
Prime the pipette tip by filling it with 500 ul chloroform, ejecting the chloroform back into the reagent container, and filling it again.This will prevent the chloroform from leaking out of the pipette and is only necessary when a fresh pipette tip is used.

14.

Vortex.

15.

Centrifuge the tubes at max speed (>15,000 g) for 0h 1m 0s to separate the solvent phases.

16.

Transfer only the aqueous phase (upper phase) to a new labeled 2 mL tube.

17.

Store at -20°C up to several months.

Starch Precipitate

18.

After removing the last ethanolic supernatant, leave the lids off and dry the remaining pellet at 40°Covernight

Note
If a 40°C oven is not available, samples can be dried at 30°C plus 58°C for 2-3 hours the following day.

19.

After the pellet is dry, replace the lids. The dried starch pellet can be stored at room temperature.

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