Proteolytic peptide measurement of Human whole lung tissue using Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) Acquisition by Data-Independent Acquisition (DIA) on an Orbitrap Eclipse Tribrid Mass Spectrometer for peptide/protein identification and quantification by processing DIA data using Spectronaut software.
Steps
1.
Search the DIA data with Spectronaut using the spectral library-free directDIA
algorithm against a Human UniProt-SwissProt proteome database https://www.uniprot.org/proteomess), applying the settings described in Table 1 1.
Table 1. Settings for the data-independent acquisition data processing with Spectronaut/directDIA
