Cell DIVE Platform | Accessing HuBMAP Datasets and Analysis on Globus
Liz McDonough, Christine Surrette
Abstract
This method describes navigating to Globus from the HuBMAP data portal to access Cell DIVE data and analysis.
Steps
Click on the DOI link provided, or alternatively navigate to http://dx.doi.org, enter the DOI in the text box, and click Go .
If the DOI takes you to a Collection Collection on the HuBMAP Data Portal, click on a HuBMAP ID of interest, located under the Dataset heading.
On the Dataset page, scroll down to the Files heading and click the provided link to Globus.
Log in to Globus using your existing organizational login e.g., university, national lab, facility, project, or eRA Commons ID.
The Cell DIVE datasets are organized under two top level directories, data_directory and extras . The data_directory contains OME-TIFF data organized by region. The extras folder contains additional files including virtual H&Es and analysis data.
To access analysis, click through to the extras/Seg_Reg sublevel directory. Analysis is organized by biomarker.
