增强子预测工具尽在这里

admin 27 2025-04-01 09:17:08 编辑

小编列出了部分增强子预测的文献,欢迎大家参考。

Herrmann C, Van de Sande B, Potier D, et al. i-cisTarget: an i ntegrative genomics method for the prediction of regulatory features and cis-regulatory modules[J]. Nucleic acids research, 2012, 40(15): e114-e114.

He Y, Gorkin D U, Dickel D E, et al. Improved regulatory element prediction based on tissue-specific local epigenomic signatures[J]. Proceedings of the National Academy of Sciences, 2017, 114(9): E1633-E1640.

Liu F, Li H, Ren C, et al. PEDLA: predicting enhancers with a deep learning-based algorithmic framework[J]. Scientific reports, 2016, 6: 28517.

Liu B, Fang L, Long R, et al. iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition[J]. Bioinformatics, 2015, 32(3): 362-369.

Kleftogiannis D, Kalnis P, Bajic V B. DEEP: a general computational framework for predicting enhancers[J]. Nucleic acids research, 2014, 43(1): e6-e6.

Zhao C, Li X, Hu H. PETModule: a motif module based approach for enhancer target gene prediction[J]. Scientific reports, 2016, 6: 30043.

Visel A, Minovitsky S, Dubchak I, et al. VISTA Enhancer Browser—a database of tissue-specific human enhancers[J]. Nucleic acids research, 2006, 35(suppl_1): D88-D92.

Gao T, He B, Liu S, et al. EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types[J]. Bioinformatics, 2016, 32(23): 3543-3551.

更多工具参考:

https://omictools.com/enhancer-prediction-category

这里列出了能够收集到的与增强子预测的所有工具,欢迎点击原文查看!

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